Lercher Lab

Inflammatory Signal Integration and Inflammatory Memory

We study how immune cells integrate inflammatory signals and remember them, building a clearer picture of immunity in the real world.

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Lercher Lab research team

Research

The Problem

Humans encounter a plethora of microbes daily. Immune cells are the first responders to fend off pathogens, but can also cause life-threatening hyperinflammatory dysregulation. We focus on viral infection, where this balance is particularly precarious. Viruses and cytokines are prime inducers of inflammation, but cell-intrinsic and extrinsic factors, including cell identity, tissue environment and even diet, influence immune responses. Another regulatory layer comes from past inflammatory encounters, which result in durable epigenetic memory that alters secondary immune responses. This inflammatory memory impacts secondary inflammatory responses and disease pathology. There is a gap in our understanding of how cells integrate this myriad of immunological and environmental cues to mount adequate responses and establish memory.

The Approach

In the Lercher lab, we take a holistic approach to map the underlying molecular networks and decipher the black box of inflammatory signal integration and epigenetic memory formation. We combine tractable primary cell culture systems with mouse models of viral infection to recapitulate real-world pathogen encounters. Using next-generation sequencing, real-time imaging, genetic engineering and immune profiling, we aim to build a framework of signal integration and cell-cell communication across tissues in health and disease. Our overarching goal is to uncover fundamental principles of immunity that underlie disease development, progression and resolution, to enable new therapeutic approaches and boost pandemic preparedness.

The Questions

  1. 01How do cells integrate inflammatory cues to mount adequate immune responses?
  2. 02What are the determinants of cell-type or tissue-specific immune responses?
  3. 03How do innate immune responses lead to durable epigenetic memory?
  4. 04Which cellular and cross-organ communication networks shape innate immunity and memory?
  5. 05Can we use synthetic immunology to build circuits that control complex immune responses?

Team

Alexander Lercher

Alexander Lercher

Group Leader

Originally from Austria, Alex did his PhD with Andreas Bergthaler at CeMM in Vienna, followed by a postdoc with Charlie Rice at Rockefeller University. He now leads his own group at CIID Heidelberg, where he studies how immune cells interpret complex inflammatory signals and how these experiences shape epigenetic memory. Outside the lab he follows F1 as a Ferrari supporter - a year-round exercise in optimism.

Hannah Simonis

Hannah Simonis

Predoctoral Fellow

Hannah studied Biochemistry at the University of Tübingen and Molecular Biosciences with a focus on Infectious Diseases at Heidelberg University. She completed her Master’s thesis in Frauke Mücksch’s group at the CIID. In the Lercher lab, Hannah will investigate the potential of inflammatory memory in stem-like CD8 T cells. Beyond her research, Hannah can often be found on the tennis court, trying to turn her serve into something respectable.

Technical Assistant

Technical Assistant

Technical Assistant

Coming soon!

PhD Student

PhD Student

PhD Student

Coming soon!

Publications

Brain endothelial cells orchestrate a neuroprotective antiviral state in the CNS in response to peripheral viral pattern sensing

Lewy T, Sierra MA, Pourshadi N, Hoffmann HH, Dinnon KH, Gola A, Wang W, Chen HA, Quirk C, Zhang H, Doyle MP, Mason CE, Diehl GE, Hohl TM, Fuchs E, MacDonald MR, Wu Z, Crowe JE Jr, Rice CM†, Lercher A†,✉️

Immunity · 2026 · View paper →

Antiviral innate immune memory in alveolar macrophages following SARS-CoV-2 infection ameliorates secondary influenza A virus disease

Lercher A✉️, Cheong JG, Bale MJ, Jiang C, Hoffmann HH, Ashbrook AW, Lewy T, Yin YS, Quirk C, DeGrace EJ, Chiriboga L, Rosenberg BR, Josefowicz SZ✉️, Rice CM✉️

Immunity · 2024 · View paper →

Hepatocyte-intrinsic type I interferon signaling reprograms metabolism and reveals a novel compensatory mechanism of the tryptophan-kynurenine pathway in viral hepatitis

Lercher A✉️, Popa AM, Viczenczova C, Kosack L, Klavins K, Agerer B, Opitz CA, Lanz TV, Platten M, Bergthaler A✉️

PLoS Pathogens · 2020 · View paper →

Systemic Immunometabolism: Challenges and Opportunities

Lercher A, Baazim H, Bergthaler A

Immunity · 2020 · View paper →

Type I Interferon Signaling Disrupts the Hepatic Urea Cycle and Alters Systemic Metabolism to Suppress T Cell Function

Lercher A, Bhattacharya A, Popa AM, Caldera M, Schlapansky MF, Baazim H, Agerer B, Gürtl B, Kosack L, Májek P, Brunner JS, Vitko D, Pinter T, Genger JW, Orlova A, Pikor N, Reil D, Ozsvár-Kozma M, Kalinke U, Ludewig B, Moriggl R, Bennett KL, Menche J, Cheng PN, Schabbauer G, Trauner M, Klavins K, Bergthaler A

Immunity · 2019 · View paper →

Funding

CHS Stiftung
SynthImmune Cluster of Excellence

Affiliation

Heidelberg University Medical FacultyUKHDCIID

Contact

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CIID, Im Neuenheimer Feld 344, 69120 Heidelberg